Övervakningen av fågelinfluensaviruset hos vilda fåglar och svenska fjäderfä sker genom EU:s gemensamma övervakningsprogram. Det svenska kontrollprogrammet omfattar undersökning av värphöns, avelsdjur, kalkoner, gäss, strutsar och vilda fåglar. Provtagning av fjäderfä sker genom blodprov vid slakt. Utöver den löpande kontrollen ingår aktiv övervakning genom provtagning av flockar med symtom där fågelinfluensa och/eller Newcastelsjuka inte kan uteslutas.
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